nf-core: Advisoriesnf-core advisories and security announcements.https://nf-co.re/Final family representative sequences are faulty in proteinfamilies pipeline 1.3.0https://nf-co.re/advisories/proteinfamilies-incorrect-representatives/https://nf-co.re/advisories/proteinfamilies-incorrect-representatives/Bug inside the extract_family_reps.py script of v1.3.0Mon, 29 Sep 2025 00:00:00 GMT.command.run Permission deniedhttps://nf-co.re/advisories/process-shell-configuration/https://nf-co.re/advisories/process-shell-configuration/Nextflow versions after 24.10.6 are incompatible with certain nf-core pipelines published in 2024 and early 2025.Thu, 15 May 2025 00:00:00 GMTTrimming parameters ignored in RNA-seq pipeline 3.10https://nf-co.re/advisories/rnaseq-trimming-parameters-ignored/https://nf-co.re/advisories/rnaseq-trimming-parameters-ignored/The clip parameters for read trimming remain without affect for that pipeline versionFri, 13 Jan 2023 00:00:00 GMTA faulty Answer to Life, the Universe, and Everythinghttps://nf-co.re/advisories/42/https://nf-co.re/advisories/42/A critical mistake affecting the meaning of life calculationsFri, 25 May 2001 00:00:00 GMT