# nf-core/newsletter, November 2026 2 blog posts, 2 advisories, 21 pipeline releases. [View on the nf-core website](https://nf-co.re/newsletter/2026/11) ## Blog posts - [nf-core/tools - 4.2.{0,1}](https://nf-co.re/blog/2026/tools-4_2_0) — Next stop: pipeline metro maps _21 Oct 2026 · by mashehu_ - [Kicking off the Benchmarking SIG Monthly Meetings](https://nf-co.re/blog/2026/benchmarking-sig-launch) — Join us for our new monthly meetings, starting with variant benchmarking _15 Oct 2026 · by kubranarci, georgiakes_ ## Advisories - **HIGH** [Secrets in the debug log artifact of the AWS test workflows](https://nf-co.re/advisories/aws-test-debug-log-secrets) _(Security)_ — The AWS test workflows in the pipeline template uploaded a debug log containing secrets as a public workflow artifact, letting anyone signed in to GitHub read them - **CRITICAL** [Bot token theft via the pipeline template's fix-linting workflow](https://nf-co.re/advisories/fix-linting-workflow-vulnerability) _(Security)_ — A workflow in the pipeline template ran a contributor's own lint configuration with access to a shared bot token, letting an outside attacker run code on nf-core's CI and steal the token ## New pipeline first releases 🎉 These pipelines just had their very first release. - [nf-core/bacmodel](https://nf-co.re/bacmodel) v1.0.0, v1.0.1 — Systems-based bacterial functional modeling pipeline - [nf-core/datasync](https://nf-co.re/datasync) v1.0.0, v1.0.1, v1.0.2 — nf-core/datasync is a system operation pipeline that provides several workflows for handling system operation / automation tasks - [nf-core/plasmodiumdrugres](https://nf-co.re/plasmodiumdrugres) v1.0.0 — Pipeline for analyzing drug resistance markers from Plasmodium microhaplotype data. Translates variants into amino acid changes at drug resistance loci and estimates allele frequencies and prevalences at both single-locus and multi-locus levels. Microhaplotype data can be supplied in the form of an allele table or a PMO file. - [nf-core/provenancereport](https://nf-co.re/provenancereport) v1.0.0 — Generate reproducible Quarto reports together with an audit trail of inputs, checksums, software versions, runtime environments, and provenance metadata. - [nf-core/tumourevo](https://nf-co.re/tumourevo) v1.0.0 — Analysis pipeline to model tumour clonal evolution from WGS data (driver annotation, quality control of copy number calls, subclonal and mutational signature deconvolution) ## Pipeline releases - [nf-core/airrflow](https://nf-co.re/airrflow) v5.1.2 _(10 Oct 2026)_ - [nf-core/ampliseq](https://nf-co.re/ampliseq) v3.0.0, v3.1.0 _(28 Oct 2026)_ - [nf-core/detaxizer](https://nf-co.re/detaxizer) v1.4.0 _(26 Oct 2026)_ - [nf-core/drugresponseeval](https://nf-co.re/drugresponseeval) v1.3.0 _(12 Oct 2026)_ - [nf-core/epitopeprediction](https://nf-co.re/epitopeprediction) v3.2.0 _(15 Oct 2026)_ - [nf-core/genomeassembler](https://nf-co.re/genomeassembler) v2.0.1 _(23 Oct 2026)_ - [nf-core/magmap](https://nf-co.re/magmap) v1.3.0, v1.3.1 _(22 Oct 2026)_ - [nf-core/metatdenovo](https://nf-co.re/metatdenovo) v2.0.0 _(7 Oct 2026)_ - [nf-core/mhcquant](https://nf-co.re/mhcquant) v3.3.0 _(2 Oct 2026)_ - [nf-core/pixelator](https://nf-co.re/pixelator) v5.0.3 _(7 Oct 2026)_ - [nf-core/proteinfamilies](https://nf-co.re/proteinfamilies) v2.6.0 _(1 Oct 2026)_ - [nf-core/rnasplice](https://nf-co.re/rnasplice) v2.0.0 _(20 Oct 2026)_ - [nf-core/rnastructurome](https://nf-co.re/rnastructurome) v1.1.0 _(23 Oct 2026)_ - [nf-core/sarek](https://nf-co.re/sarek) v3.11.0 _(26 Oct 2026)_ - [nf-core/stableexpression](https://nf-co.re/stableexpression) v1.1.0 _(7 Oct 2026)_ - [nf-core/variantbenchmarking](https://nf-co.re/variantbenchmarking) v1.6.0 _(30 Oct 2026)_ ## In case you missed it ### Recent events - [Hackathon - October 2026 (Barcelona)](https://nf-co.re/events/2026/hackathon-barcelona) — 15 Oct 2026 – 16 Oct 2026 (Hackathon) - [Bytesize: nf-core/hackathon October 2026 Wrap-up](https://nf-co.re/events/2026/bytesize_hackathon-october-2026-wrapup) — 21 Oct 2026 (Bytesize) - [#animal-genomics: October Meeting](https://nf-co.re/events/2026/sig_animalgenomics_oct) — 21 Oct 2026 (Talk) ### Earlier advisories - **HIGH** [Merged families use the wrong sample's seed MSAs in proteinfamilies pipeline 2.0.0 - 2.4.0](https://nf-co.re/advisories/proteinfamilies-cross-sample-merged-seeds) — 11 Aug 2026 ## New pipelines & proposals ### Pipeline proposals From [nf-core/proposals](https://github.com/nf-core/proposals/issues). - [nf-core/genomeannotation](https://github.com/nf-core/proposals/issues/169) — Accepted (#169) - [nf-core/stampseq](https://github.com/nf-core/proposals/issues/164) — Accepted (#164) - [nf-core/eupathpopgen](https://github.com/nf-core/proposals/issues/161) — Accepted (#161) - [nf-core/glpopgen](https://github.com/nf-core/proposals/issues/156) — Accepted (#156) - [nf-core/rami2d](https://github.com/nf-core/proposals/issues/187) — New (#187) - [nf-core/pitisfinder](https://github.com/nf-core/proposals/issues/186) — New (#186) - [nf-core/ont_dap](https://github.com/nf-core/proposals/issues/185) — New (#185) - [nf-core/sifts](https://github.com/nf-core/proposals/issues/184) — New (#184) - [nf-core/sherlock](https://github.com/nf-core/proposals/issues/183) — New (#183) - [nf-core/deconflow](https://github.com/nf-core/proposals/issues/182) — New (#182) - [nf-core/beav](https://github.com/nf-core/proposals/issues/181) — New (#181) - [nf-core/sangerseq](https://github.com/nf-core/proposals/issues/180) — New (#180) - [nf-core/kanata](https://github.com/nf-core/proposals/issues/179) — New (#179) - [nf-core/pira](https://github.com/nf-core/proposals/issues/177) — New (#177) - [nf-core/oncoseq](https://github.com/nf-core/proposals/issues/176) — New (#176) - [nf-core/rnadegradome](https://github.com/nf-core/proposals/issues/175) — New (#175) - [nf-core/dapseq](https://github.com/nf-core/proposals/issues/174) — New (#174) --- This newsletter is brought to you by the [nf-core](https://nf-co.re) community.