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nf-core/spatialtranscriptomics
Pipeline for processing spatially-resolved gene counts with spatial coordinates, image data, and optionally single cell RNA-seq data, designed for 10x genomics visium and single cell transcriptomics.
10x-genomics10xgenomicsimage-processingmicroscopyrna-seqsingle-cellspatialspatial-transcriptomicssttranscriptomicsvisium
This is the development version of the pipeline.
Launch development version
https://github.com/nf-core/spatialtranscriptomics