nf-core/bactmap

A mapping-based pipeline for creating a phylogeny from bacterial whole genome sequences

bacteriabacterialbacterial-genome-analysisgenomicsmappingphylogenytree

Launch version 1.0.0 https://github.com/nf-core/bactmap

Name Last Modified Size

bwa/ fastp/ fasttree/ gubbins/ iqtree/ mash/ multiqc/ pipeline_info/ pseudogenomes/ rapidnj/ rasusa/ raxmlng/ samtools/ snpsites/ variants/