Introduction

nf-core is by design a collaborative effort, and would not exist if it were not for the efforts of many dedicated contributors.

Contributors

The nf-core pipelines and community is driven by many individuals, listed below. This list updates automatically.

Want to see who's working on what? See the contributor leaderboard on the Statistics page.

Organisations

Some of the organisations running nf-core pipelines are listed below, along with a key person who you can contact for advice.

Is your group missing? Please submit a pull request to add yourself! It's just a few lines in a simple YAML file..
National Genomics Infrastructure
SciLifeLab

The NGI provides next-generation sequencing services for Swedish academic groups. Many of the nf-core pipelines started life as SciLifeLab / NGI workflows.

Quantitative Biology Center
Universität Tübingen

The Quantitative Biology Center provides a one-stop-shop for access to high-throughput technologies in the life sciences and the required bioinformatics analysis. As a bioinformatics core facility, we provide advanced data analysis techniques.

The Francis Crick Institute

The Francis Crick Institute is an organisation dedicated to understanding the fundamental biology underlying health and disease.

Boehringer Ingelheim Pharma GmbH & CO. KG

Improving the health and quality of life of humans and animals is the goal of the research-driven pharmaceutical company Boehringer Ingelheim. The focus in doing so is on diseases for which no satisfactory treatment option exists to date. The company therefore concentrates on developing innovative therapies that can extend patients’ lives. In animal health, Boehringer Ingelheim stands for advanced prevention.

Seqera Labs

Seqera Labs is simplfying data analysis pipelines across cluster and cloud. As the maintainers of the Nextflow project we focus on enabling high-throughput computing solutions that streamline complex pipelines.

Centre for Genomic Regulation

The Centre for Genomic Regulation (CRG) is an international biomedical research institute of excellence, based in Barcelona, Spain, whose mission is to discover and advance knowledge for the benefit of society and public health.

Genome Institute of Singapore

The Genome Institute of Singapore (GIS) is a national initiative for Singapore with a global vision that seeks to use genomic sciences to achieve extraordinary improvements in human health and public prosperity.

The Competence Centre for Genome Analysis Kiel

The Competence Centre for Genome Analysis Kiel is funded by the German Research Foundation and specialises in high-throughput sequencing of genomes.

The Wellcome Trust Sanger Institute

The Wellcome Sanger Institute is one of the premier centres of genomic discovery and understanding in the world. It leads ambitious collaborations across the globe to provide the foundations for further research and transformative healthcare innovations.

Beatson Institute & Institute of Cancer Sciences
Cancer Research UK, University of Glasgow

The Beatson Institute is one of Cancer Research UK’s core-funded institutes. They have built an excellent reputation for basic cancer research, including world-class metabolism studies and renowned in vivo modelling of tumour growth and metastasis.

Swedish University of Agricultural Sciences

The Swedish University of Agricultural Sciences is an international organisation providing top class research, education and environmental analysis in the sciences for sustainable life.

International Agency for Research on Cancer
World Health Organisation

The International Agency for Research on Cancer is the specialized cancer agency of the World Health Organization. The objective of the IARC is to promote international collaboration in cancer research.

Lifebit Biotech

Lifebit is a London-based biotech start-up which offers an intelligent genomics platform to researchers and their corresponding organisations for scalable, modular and reproducible genomic analysis.

Sun Yat-sen University Cancer Center

Sun Yat-sen University Cancer Center is a comprehensive cancer centre which provides clinical care to patients, education (students & CME), perform research and prevention activities.

BioFrontiers Institute at University of Colorado, Boulder
DowellLab

The BioFrontiers Institute at the University of Colorado (CU) is an interdisciplinary hub for bioscience research and education with a focus on improving human health.

Gregor Mendel Institute of Molecular Plant Biology
Austrian Academy of Sciences

The Gregor Mendel Institute of Molecular Plant Biology, an Institute of the Austrian Academy of Sciences, is dedicated to basic research in diverse aspects of plant molecular biology.

Research Institute of Molecular Pathology IMP

The Research Institute of Molecular Pathology (IMP) is a basic research institute in molecular biology, based at the Vienna Biocenter in Austria.

City of Hope

City of Hope is a private, not-for-profit clinical research center, hospital and graduate medical school located in Duarte, California, United States.

Indian Institute of Science Education and Research Mohali

IISER Mohali is an autonomous academic and research institution at Mohali, Punjab, India.

Max Planck Institute for the Science of Human History

The Max Planck Institute for the Science of Human History (MPI-SHH) in Jena was founded in 2014 to target fundamental questions of human history and evolution since the Paleolithic.

German Center for Neurodegenerative Diseases
Helmholtz Association

The DZNE investigates the causes of neurodegenerative diseases and develops novel strategies for prevention, treatment and care.

New York University

Founded in 1831, New York University is now one of the largest private universities in the United States. Of the more than 3,000 colleges and universities in America, New York University is one of only 60 member institutions of the distinguished Association of American Universities.

Royal Botanic Gardens Victoria

Royal Botanic Gardens Victoria is one of the world's leading botanic gardens and a centre of excellence for horticulture, science and education.

National Bioinformatics Infrastructure Sweden
SciLifeLab

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

Institut Curie
Bioinformatics platform

The Institut Curie is a private nonprofit organization created in 1909 which combines a leading European cancer research center with a hospital group. The Institut Curie Bioinformatics platform is composed of biostatisticians and software engineers who offer a multidisciplinary expertise to support the biotechnological platforms, the research units and the hospital in their daily activities.

Chan Zuckerberg Biohub

CZ Biohub is an independent, non-profit medical research organization working in collaboration with UC San Francisco, Stanford University and UC Berkeley. Our vision is to develop and apply technologies that will enable doctors to cure, prevent or manage all diseases during our children’s lifetime.

The Picower for Learning and Memory
Bioinformatics Core

The institute is focused on studying all aspects of learning and memory; specifically, it has received over US$50 million to study Alzheimer's, schizophrenia and similar diseases.

University of California Berkeley
RISE Lab

Our mission in the RISE Lab at Unversity of California is to develop technologies that enable applications to interact intelligently and securely with their environment in real time.

Michael Heuer heuermh @UCBerkeley
Institut Pasteur
Hub de Bioinformatique et Biostatistique

The Institut Pasteur is a private, non-profit foundation. Its mission is to help prevent and treat diseases, mainly those of infectious origin, through research, teaching, and public health initiatives.

International Institute of Information Technology - Bangalore

To build on the track record set by India in general and Bangalore in particular, to enable India to play a key role in the global IT scenario through a world class institute with a focus on education and research, entrepreneurship and innovation.

Max Planck Institute for Biochemistry
Technical University of Munich

The Max Planck Institute of Biochemistry aims to understand the structure and function of proteins - from single molecules to complex organisms.

Linnaeus University Centre for Ecology and Evolution in Microbial model Systems
Linnaeaus University, Kalmar

The research that is carried out at the Linnaeus University Centre for Ecology and Evolution in Microbial model Systems (EEMiS) is focused on marine environments in the Baltic Sea – on the border between sea and land, in coastal waters and in the open sea.

Baylor College of Medicine

Baylor College of Medicine is a health sciences university that creates knowledge and applies science and discoveries to further education, healthcare and community service locally and globally.

The Hebrew University of Jerusalem
MethylGrammar Lab

The MethylGrammar Lab at the Hebrew University School of Medicine is developing tools for analyzing bisulfite sequencing and other epigenomic sequencing methods. We are interested in epigenomic biomarkers of disease, especially DNA methylation.

National Institute of Biological Standards and Control
Analytical and Biological Sciences

The National Institute for Biological Standards and Control (NIBSC) plays a leading national and international role in assuring the quality of biological medicines and diagnostics.

Ardigen S.A.

Ardigen is harnessing advanced Artificial Intelligence methods for novel precision medicine. We accelerate therapy development by decoding microbiome, designing immunity and providing digital drug discovery services. We are rooted in biology and hold deep expertise in bioinformatics, machine learning and software engineering.

UCL Cancer Institute

The UCL Cancer Institute is the hub for cancer research at University College London, one of the World's leading universities. The Institute draws together over 400 talented scientists who are working together to translate research discoveries into developing kinder, more effective therapies for cancer patients.

Flomics Biotech

Flomics Biotech is developing cell-free RNA liquid biopsies for early detection of complex diseases. We combine optimized molecular biology protocols with machine learning algorithms to obtain accurate, reproducible and meaningful results that can be easily implemented in the clinical practice.

MRC Human Genetics Unit, MRC Institute of Genetics and Molecular Medicine, University of Edinburgh

The MRC Human Genetics Unit discovers how changes in our DNA impact our lives. We combine the latest computational and experimental technologies to investigate how our genomes work to control the function of molecules, cells and tissues in people and populations.

DRESDEN-concept Genome Center
Center for Molecular and Cellular Bioengineering, Dresden University of Technology

The DRESDEN-concept Genome Center is a German competence center for next generation sequencing. We offer services for data generation and bioinformatics in the areas of single cell applications, various short read sequencing applications, and long read genome sequencing and assembly.

Projects we are involved with

A number of large projects are committing to working with the nf-core community for data analysis pipelines. You can see an overview of these below.

German National Sequencing Initiative

The German Funding Body (DFG) has approved funding to establish 4 national high-throughput sequencing centers in Germany. The project will rely on nf-core pipelines for analyzing large-scale genomics data. Contributors from the Kiel, Tübingen and Dresden sites are already actively contributing to nf-core, and the other sequencing center in Cologne/Bonn (West German Genome Center) has committed to joining and contributing its expertise.

EASI-Genomics

EASI-Genomics provides easy and seamless access to cutting-edge DNA sequencing technologies to researchers from academia and industry, within a framework that ensures compliance with ethical and legal requirements, as well as FAIR and secure data management. EASI-Genomics aims to build a community of practice, which leverages advanced sequencing technologies beyond country and sector borders to tackle global challenges in science. It organizes competitive calls to get fully-funded access to state-of-the-art facilities and services, including integrative data analysis.

EASI-Genomics partners are committed to working within community best-practices for the bioinformatics processing of the data that they produce. To this end they will use nf-core pipelines to process data and contribute new developments and pipelines within the nf-core framework.

BovReg

BovReg is a H2020 project to form a consortium that will provide a comprehensive map of functionally active genomic features in cattle and how their (epi)genetic variation in beef and dairy breeds translates into phenotypes.

BovReg reference bioinformatics pipelines will adhere to nf-core guidelines in order to deliver reproducible data analyses to the community.

Dockstore

Dockstore is a platform used by researchers across the world to share reproducible computational analyses and hosts hundreds of individual tools and workflows created by more than a hundred different contributors.

By using lightweight containerization technology along with the essential metadata needed for combining tools into scientific analysis "recipes", Dockstore allows users to create, share, publish (using citable DOIs) and reproducibly reuse these recipes across platforms and compute environments.

Workflow Hub

Workflow Hub was created as part of the EOSC-Life WP2: Tools Collaboratory and Research Objects to glue in federated workflow and tool descriptions across research infrastructures.

It is workflow system agnostic, supports a repository of workflows in native and standardised form and the virtual aggregation of established tool, workflow and registries to support discovery over a fragmented ecosystem. The federated registry will support a common API to simplify access for tool developers.

Testimonials