Introduction

nf-core is by design a collaborative effort, and would not exist if it were not for the efforts of many dedicated contributors.

Contributors

The nf-core pipelines and community is driven by many individuals, listed below. This list updates automatically.

Want to see who's working on what? See the contributor leaderboard on the Statistics page.

Organisations

Some of the organisations running nf-core pipelines are listed below, along with a key person who you can contact for advice.

Is your group missing? Please submit a pull request to add yourself! It's just a few lines in a simple YAML file..
National Genomics Infrastructure
SciLifeLab

The NGI provides next-generation sequencing services for Swedish academic groups. Many of the nf-core pipelines started life as SciLifeLab / NGI workflows.

Quantitative Biology Center
Universität Tübingen

The Quantitative Biology Center provides a one-stop-shop for access to high-throughput technologies in the life sciences and the required bioinformatics analysis. As a bioinformatics core facility, we provide advanced data analysis techniques.

Centre for Genomic Regulation

The Centre for Genomic Regulation (CRG) is an international biomedical research institute of excellence, based in Barcelona, Spain, whose mission is to discover and advance knowledge for the benefit of society and public health.

Genome Institute of Singapore

The Genome Institute of Singapore (GIS) is a national initiative for Singapore with a global vision that seeks to use genomic sciences to achieve extraordinary improvements in human health and public prosperity.

The Francis Crick Institute

The Francis Crick Institute is an organisation dedicated to understanding the fundamental biology underlying health and disease.

The Competence Centre for Genome Analysis Kiel

The Competence Centre for Genome Analysis Kiel is funded by the German Research Foundation and specialises in high-throughput sequencing of genomes.

The Wellcome Trust Sanger Institute

The Wellcome Sanger Institute is one of the premier centres of genomic discovery and understanding in the world. It leads ambitious collaborations across the globe to provide the foundations for further research and transformative healthcare innovations.

Beatson Institute & Institute of Cancer Sciences
Cancer Research UK, University of Glasgow

The Beatson Institute is one of Cancer Research UK’s core-funded institutes. They have built an excellent reputation for basic cancer research, including world-class metabolism studies and renowned in vivo modelling of tumour growth and metastasis.

Swedish University of Agricultural Sciences

The Swedish University of Agricultural Sciences is an international organisation providing top class research, education and environmental analysis in the sciences for sustainable life.

International Agency for Research on Cancer
World Health Organisation

The International Agency for Research on Cancer is the specialized cancer agency of the World Health Organization. The objective of the IARC is to promote international collaboration in cancer research.

Lifebit Biotech

Lifebit is a London-based biotech start-up which offers an intelligent genomics platform to researchers and their corresponding organisations for scalable, modular and reproducible genomic analysis.

Sun Yat-sen University Cancer Center

Sun Yat-sen University Cancer Center is a comprehensive cancer centre which provides clinical care to patients, education (students & CME), perform research and prevention activities.

BioFrontiers Institute at University of Colorado, Boulder
DowellLab

The BioFrontiers Institute at the University of Colorado (CU) is an interdisciplinary hub for bioscience research and education with a focus on improving human health.

Gregor Mendel Institute of Molecular Plant Biology
Austrian Academy of Sciences

The Gregor Mendel Institute of Molecular Plant Biology, an Institute of the Austrian Academy of Sciences, is dedicated to basic research in diverse aspects of plant molecular biology.

Research Institute of Molecular Pathology IMP

The Research Institute of Molecular Pathology (IMP) is a basic research institute in molecular biology, based at the Vienna Biocenter in Austria.

City of Hope

City of Hope is a private, not-for-profit clinical research center, hospital and graduate medical school located in Duarte, California, United States.

Indian Institute of Science Education and Research Mohali

IISER Mohali is an autonomous academic and research institution at Mohali, Punjab, India.

Max Planck Institute for the Science of Human History

The Max Planck Institute for the Science of Human History (MPI-SHH) in Jena was founded in 2014 to target fundamental questions of human history and evolution since the Paleolithic.

German Center for Neurodegenerative Diseases
Helmholtz Association

The DZNE investigates the causes of neurodegenerative diseases and develops novel strategies for prevention, treatment and care.

New York University

Founded in 1831, New York University is now one of the largest private universities in the United States. Of the more than 3,000 colleges and universities in America, New York University is one of only 60 member institutions of the distinguished Association of American Universities.

Royal Botanic Gardens Victoria

Royal Botanic Gardens Victoria is one of the world's leading botanic gardens and a centre of excellence for horticulture, science and education.

National Bioinformatics Infrastructure Sweden
SciLifeLab

NBIS is a distributed national bioinformatics infrastructure, supporting life sciences in Sweden.

Institut Curie
Bioinformatics platform

The Institut Curie is a private nonprofit organization created in 1909 which combines a leading European cancer research center with a hospital group. The Institut Curie Bioinformatics platform is composed of biostatisticians and software engineers who offer a multidisciplinary expertise to support the biotechnological platforms, the research units and the hospital in their daily activities.

Chan Zuckerberg Biohub

CZ Biohub is an independent, non-profit medical research organization working in collaboration with UC San Francisco, Stanford University and UC Berkeley. Our vision is to develop and apply technologies that will enable doctors to cure, prevent or manage all diseases during our children’s lifetime.

The Picower for Learning and Memory
Bioinformatics Core

The institute is focused on studying all aspects of learning and memory; specifically, it has received over US$50 million to study Alzheimer's, schizophrenia and similar diseases.

University of California Berkeley
RISE Lab

Our mission in the RISE Lab at Unversity of California is to develop technologies that enable applications to interact intelligently and securely with their environment in real time.

Institut Pasteur
Hub de Bioinformatique et Biostatistique

The Institut Pasteur is a private, non-profit foundation. Its mission is to help prevent and treat diseases, mainly those of infectious origin, through research, teaching, and public health initiatives.

International Institute of Information Technology - Bangalore

To build on the track record set by India in general and Bangalore in particular, to enable India to play a key role in the global IT scenario through a world class institute with a focus on education and research, entrepreneurship and innovation.

Max Planck Institute for Biochemistry
Technical University of Munich

The Max Planck Institute of Biochemistry aims to understand the structure and function of proteins - from single molecules to complex organisms.

Linnaeus University Centre for Ecology and Evolution in Microbial model Systems
Linnaeaus University, Kalmar

The research that is carried out at the Linnaeus University Centre for Ecology and Evolution in Microbial model Systems (EEMiS) is focused on marine environments in the Baltic Sea – on the border between sea and land, in coastal waters and in the open sea.

Testimonials

We are collating statements and general comments from those who have either contributed to nf-core, or have chosen to routinely deploy nf-core pipelines for their data analysis. Feel free to add your own experiences, and please let us know if we have missed anything!

German National Sequencing Initiative

The German Funding Body (DFG) has approved funding to establish 4 national high-throughput sequencing centers in Germany. The project will rely on nf-core pipelines for analyzing large-scale genomics data. Contributors from the Kiel and Tübingen sites are already actively contributing to nf-core, and the other sequencing centers in Cologne/Bonn (West German Genome Center) and the Dresden Center have committed to joining and contributing their expertise.

Swedish National Genomics Infrastructure

The Swedish National Genomics Infrastructure (NGI) was a founding member of nf-core and is committed to developing analysis methodologies within the nf-core community. The NGI provides next-generatation sequencing methodologies for all Swedish researchers, from library prep to sequencing to best-practice bioinformatics analysis. We have seen fantastic uptake and feedback from pipelines within the framework and intend to be a longstanding member of the community.

The Francis Crick Institute

The Bioinformatics & Biostatistics group at The Francis Crick Institute has contributed numerous pipelines to the nf-core framework, and we have a vested interest in its ongoing development. Our aim is to automate the tedious process of going from raw data to processed results in a portable, reproducible and scalable manner, which enables our scientists to focus on the biological interpretation of their experiments. More importantly, nf-core pipelines are implemented to benefit the entire bioinformatics community, and in turn their evolution is driven by the very same community through their use, contributions and extensive feedback. This is nothing short of amazing!

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