Novo Nordisk’s Marjorie Configuration
Using the Marjorie config profile
Before running any pipeline in Novo Nordisk’s Marjorie cluster, Nextflow
will need to be installed in the conda environment being used.
To use, run the pipeline with -profile marjorie
(one hyphen).
This will download and launch the marjorie.config
which has been pre-configured with a setup suitable for the Marjorie server.
It will enable Nextflow
to manage the pipeline jobs via the Slurm
job scheduler.
Using this profile, Docker
image(s) containing required software(s) will be downloaded, and converted to Singularity
image(s) if needed before execution of the pipeline.
Below are non-mandatory information on e.g., required modules
Before running the pipeline you will need to have a working Nextflow installation and load Singularity using the environment module system on the Marjorie cluster. You can do this by doing for example: