/*
    * -------------------------------------------------
    *  HPC cluster config file
    * -------------------------------------------------
    * http://www.hpc.uct.ac.za/
    */
 
params {
    config_profile_description = 'University of Cape Town High Performance Cluster config file provided by nf-core/configs.'
    config_profile_contact = 'Katie Lennard (@kviljoen)'
    config_profile_url = 'http://hpc.uct.ac.za/index.php/hpc-cluster/'
 
    singularity_cache_dir = "/bb/DB/bio/singularity-containers/"
    igenomes_base = '/bb/DB/bio/rna-seq/references'
    max_memory = 384.GB
    max_cpus = 40
    max_time = 1000.h
    hpc_queue = 'ada'
    hpc_account = '--account cbio'
    genome = 'GRCh37'
}
 
singularity {
    enabled = true
    cacheDir = params.singularity_cache_dir
    autoMounts = true
}
 
process {
    executor = 'slurm'
    queue = params.hpc_queue
    // Increasing maxRetries, this will overwrite what we have in base.config
    maxRetries = 4
    clusterOptions = params.hpc_account
    stageInMode = 'symlink'
    stageOutMode = 'rsync'
}
 
executor {
    queueSize = 15
}