WUSTL High Throughput Computing Facility Configuration
Forked from the prince configuration.
nf-core pipelines that use this repo
All nf-core pipelines that use this config repo (which is most), can be run on the HTCF. Before running a pipeline for the first time, go into an interactive slurm session on a compute node (
srun --pty --time=02:00:00 -c 2), as the docker images for the pipeline will need to be pulled and converted.
Now, run the pipeline of your choice with
-profile wustl_htcf. This will download and launch
wustl_htcf.config which has been pre-configured with a setup suitable for the HTCF cluster. Using this profile, a docker image containing all of the required software will be downloaded, and converted to a singularity image before execution of the pipeline. This step takes time!!
An example commandline:
nf-core pipelines that do not use this repo
If the pipeline has not yet been configured to use the repository, then you will have to do it manually. Add the following lines to the end of the pipeline’s