Project aim

We are planning on taking over the GWAS project that was already proposed as a new nf-core pipeline, but that was never started.

The project will focus on creating a framework for Genome Wide Association Studies.

Every help is welcome.

Goals

  • Establishing ideas
    • We would like to establish the best tools that people need for their work. We will do an open discussion to choose all the features that may be needed.
  • Build missing modules.
    • Most tools are not present in nf-core. Check the samplesheet for tool ideas.
  • Test data.
    • Identify data for use in unit tests.
  • Buidling the pipeline.
    • We aim to build with basic pipeline to deal with SNPs and univariate tratis. We will expand on this in the future.
meme of Boromir explaining that GWAS are not as simple as one might think
category
pipelines