This project focuses on initiating [nf-core/dragen], a nf-core pipeline for processing illumina UMI based sequencing data.
The Boston hackathon is a great opportunity to initiate the pipeline.
Goal
By the end of the hackathon, we want to have modules of demultiplex, mergelane, and alignment ready.
Planned tasks
- Add modules for demultiplex
- Add modules for merging lanes of data from illumina sequencing data.
- Add modules for alignement.
- Integrate all steps into a pipeline.
- Add documentation and usage examples.
Who should join?
This project is a good fit for people interested in:
- working on a simple Nextflow pipeline for large omics data processing
- developing pipelines to process illumina input files
Recommended preparation
Participants will benefit from:
- Basic familiarity with Git and GitHub
- Some exposure to Nextflow or nf-core
