nf-core/hadge
Comprehensive pipeline for donor demultiplexing in single cell
cell-hashingdeconvolutiondemultiplexingdonor-assignmentdonor-deconvolutiongenetic-demultiplexinggenotype-deconvolutionhashing-deconvolutionhashtag-oligonucleotideshtosingle-cell
These pages are for an old version of the pipeline (
Launch version 0.1.0 https://github.com/nf-core/hadge 0.1.0). The latest
stable release is
0.2.0
.
hadge
Read the documentation and the associated manuscript
Quickstart
git clone https://github.com/theislab/hadge.git
sh hadge/test_data/download_data.sh
nextflow run main.nf -profile testCitation
hadge: a comprehensive pipeline for donor deconvolution in single cell
Fabiola Curion, Xichen Wu, Lukas Heumos, Mariana Gonzales Andre, Lennard Halle, Melissa Grant-Peters, Charlotte Rich-Griffin, Hing-Yuen Yeung, Calliope A. Dendrou, Herbert B. Schiller, Fabian J. Theis
bioRxiv 2023.07.23.550061; doi: https://doi.org/10.1101/2023.07.23.550061
run with
subscribers
2
stars
25
open issues
15
open PRs
3
last release
almost 2 years ago
last update
almost 2 years ago