Pipeline for HiCAR data, a robust and sensitive multi-omic co-assay for simultaneous measurement of transcriptome, chromatin accessibility and cis-regulatory chromatin contacts.
Define where the pipeline should find input data and save output data.
Reference genome related files and options required for the workflow.
Parameters used to describe the experiment designs.
Options for tracks viewed by igv, ucsc genome browser and virtual 4c plot tools
Parameters used to describe centralised config profiles. These should not be edited.
Set the top limit for requested resources for any single job.
Less common options for the pipeline, typically set in a config file.
To skip some processes or workflows.