Read CEL files into an ExpressionSet and generate a matrix
meta
Groovy Map containing sample information e.g. [ id:‘test’ ]
samplesheet
CSV or TSV format sample sheet with sample metadata and CEL file names
celfiles_dir
Path to a directory containing CEL files
*.{CEL,CEL.gz}
description
Optional description file in MIAME format
expression
TSV-format intensity matrix
matrix.tsv
annotation
TSV-format annotation table
*.annotation.tsv
rds
Serialised ExpressionSet object
*.rds
versions
File containing software versions
versions.yml
Methods for Affymetrix Oligonucleotide Arrays
