Takes a bed12 file and converts to a GFF3 file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
bed{:bash}
:file
Input bed12 file
*.bed
gff{:bash}
Groovy Map containing sample information
*.gff{:bash}
Output GFF3 file
*.{gff}
versions_agat{:bash}
${task.process}{:bash}
:string
The name of the process
agat{:bash}
The name of the tool
agat_convert_bed2gff.pl --help | grep Version | cut -d" " -f11{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
AGAT is a toolkit for manipulation and getting information from GFF/GTF files
