Description

Add intron features to gtf/gff file without intron features.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gff (file)

Input gtf/gff file

*.{gff,gff3,gtf}

config (file)

Optional input agat config file

*.{yaml,yml}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

gff (file)

Output gff3 file with introns

*.gff

Tools

agat
GPL v3

Another Gff Analysis Toolkit (AGAT). Suite of tools to handle gene annotations in any GTF/GFF format.