Description

Provides basic statistics in text format from a GFF/GTF annotation file

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

gff (file)

Annotation file in GFF3/GTF format

*.{gff, gtf}

Output

Name (Type)
Description
Pattern

stats_file (file)

Output of Statistics execution

*.{txt}

versions (file)

File containing software versions

versions.yml
author
Github user toniher
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Tools

agat
GPL v3

AGAT is a toolkit for manipulation and getting information from GFF/GTF files

github.com/NBISweden/AGAT agat.readthedocs.io https://github.com/NBISweden/AGAT 10.5281/zenodo.3552717