modules/agat_sqstatbasic

Provides basic statistics in text format from a GFF/GTF annotation file

genomegffgtfstatistics

https://github.com/nf-core/modules/[...]/modules/nf-core/agat/sqstatbasic

Description

Provides basic statistics in text format from a GFF/GTF annotation file

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]

`gff:file`

Annotation file in GFF3/GTF format

*.{gff, gtf}

Output

name:type

description

pattern

`stats_txt`

`meta:file`

Output of Statistics execution

*.{txt}

`*.txt:file`

Output of Statistics execution

*.{txt}

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

agat
GPL v3

AGAT is a toolkit for manipulation and getting information from GFF/GTF files

github.com/NBISweden/AGAT agat.readthedocs.io https://github.com/NBISweden/AGAT 10.5281/zenodo.3552717

modules/agat_sqstatbasic

Description

Input

meta:map

gff:file

Output

stats_txt

meta:file

*.txt:file

versions

versions.yml:file