Provides basic statistics in text format from a GFF/GTF annotation file
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
gff{:bash}
:file
Annotation file in GFF3/GTF format
*.{gff, gtf}
stats_txt{:bash}
Groovy Map containing sample information
*.txt{:bash}
Output of Statistics execution
*.{txt}
versions_agat{:bash}
${task.process}{:bash}
:string
The name of the process
agat{:bash}
The name of the tool
agat --version | sed 's/v//'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
AGAT is a toolkit for manipulation and getting information from GFF/GTF annotation files
