Description

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

fasta:file

A Staphylococcus aureus fasta file.

*.fasta

Output

name:type
description
pattern

summary

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

${fasta.baseName}-results/${fasta.baseName}-summary.tab:file

A summary of the agrvate assessement

*-summary.tab

results_dir

${fasta.baseName}-results:directory

Results of the agrvate assessement

*-results

versions

versions.yml:file

File containing software versions

versions.yml

Tools

agrvate
MIT

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.