Description

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

fasta (file)

A Staphylococcus aureus fasta file.

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

summary (file)

A summary of the agrvate assessement

*-summary.tab

results_dir (directory)

Results of the agrvate assessement

*-results

versions (file)

File containing software versions

versions.yml

Tools

agrvate
MIT

Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.