Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta
:file
A Staphylococcus aureus fasta file.
*.fasta
summary
${fasta.baseName}-results/${fasta.baseName}-summary.tab
A summary of the agrvate assessment
*-summary.tab
results_dir
${fasta.baseName}-results
:directory
Results of the agrvate assessment
*-results
versions_agrvate
${task.process}
:string
The name of the process
agrvate
The name of the tool
agrvate --version | sed 's/[^0-9.]//g'
:eval
The expression to obtain the version of the tool
versions
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
