Rapid identification of Staphylococcus aureus agr locus type and agr operon variants
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
fasta{:bash}
:file
A Staphylococcus aureus fasta file.
*.fasta
summary{:bash}
${fasta.baseName}-results/${fasta.baseName}-summary.tab{:bash}
A summary of the agrvate assessment
*-summary.tab
results_dir{:bash}
${fasta.baseName}-results{:bash}
:directory
Results of the agrvate assessment
*-results
versions_agrvate{:bash}
${task.process}{:bash}
:string
The name of the process
agrvate{:bash}
The name of the tool
agrvate --version | sed 's/[^0-9.]//g'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
Rapid identification of Staphylococcus aureus agr locus type and agr operon variants.
