ALE: assembly likelihood estimator.
meta
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
asm
Assembly in FASTA format
*.{fasta,fa}
bam
BAM file containing sorted read mappings
*.{bam}
ale
Output TXT file containing ALE results
*_ALEoutput.{txt}
versions
File containing software versions
versions.yml
ALE is a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
