ALE: assembly likelihood estimator.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
asm{:bash}
:file
Assembly in FASTA format
*.{fasta,fa}
bam{:bash}
BAM file containing sorted read mappings
*.{bam}
ale{:bash}
*_ALEoutput.txt{:bash}
Output TXT file containing ALE results
*_ALEoutput.{txt}
versions_ale{:bash}
${task.process}{:bash}
:string
The name of the process
ALE{:bash}
The name of the tool
20180904{:bash}
The expression to obtain the version of the tool
versions{:bash}
ALE is a generic assembly likelihood evaluation framework for assessing the accuracy of genome and metagenome assemblies.
