Description

AMPlify is an attentive deep learning model for antimicrobial peptide prediction.

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

faa:file

amino acid sequences fasta

*.{fa,fa.gz,faa,faa.gz,fasta,fasta.gz}

model_dir:directory

Directory of where models are stored (optional)

Output

name:type
description
pattern

tsv

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.tsv:file

amino acid sequences with prediction (AMP, non-AMP) and probability scores

*.{tsv}

versions

versions.yml:file

File containing software versions

versions.yml

Tools

amplify
GPL v3

Attentive deep learning model for antimicrobial peptide prediction