Description

AMPlify is an attentive deep learning model for antimicrobial peptide prediction.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

faa (file)

amino acid sequences fasta

*.{fa,fa.gz,faa,faa.gz,fasta,fasta.gz}

model_dir (directory)

Directory of where models are stored (optional)

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

tsv (file)

amino acid sequences with prediction (AMP, non-AMP) and probability scores

*.{tsv}

Tools

amplify
GPL v3

Attentive deep learning model for antimicrobial peptide prediction