Calculated genotype likelihoods from BAM files.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam
A list of BAM or CRAM files
*.{bam,cram}
meta2
Groovy Map containing reference information e.g. [ id:‘test’ ]
fasta
A reference genome in FASTA format
*.fasta
meta3
error_file
A file containing information about type specific errors.
*.error.chunkunordered
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
versions
File containing software versions
versions.yml
genotype_likelihood
File containing genotype likelihoods per sample
*.{glf,beagle}.gz
ANGSD: Analysis of next generation Sequencing Data
