modules/ariba_getref

Download and prepare database for Ariba analysis

fastqassemblyresistancevirulence

https://github.com/nf-core/modules/[...]/modules/nf-core/ariba/getref

Description

Download and prepare database for Ariba analysis

Input

name:type

description

pattern

`meta:map`

Groovy Map containing sample information e.g. [ id:‘test’ ]

`db_name:string`

A database to setup up for Ariba

Output

name:type

description

pattern

`db`

`meta:file`

An Ariba prepared database

*.tar.gz

`${db_name}.tar.gz:file`

An Ariba prepared database

*.tar.gz

`versions`

`versions.yml:file`

File containing software versions

versions.yml

Tools

ariba
GPL v3

ARIBA: Antibiotic Resistance Identification By Assembly

sanger-pathogens.github.io/ariba https://github.com/sanger-pathogens/ariba 10.1099/mgen.0.000131

modules/ariba_getref

Description

Input

meta:map

db_name:string

Output

db

meta:file

${db_name}.tar.gz:file

versions

versions.yml:file