modules/ariba_getref

Download and prepare database for Ariba analysis

fastqassemblyresistancevirulence

https://github.com/nf-core/modules/[...]/modules/nf-core/ariba/getref

Description

Download and prepare database for Ariba analysis

Input

Name (Type)

Description

Pattern

`db_name` (string)

A database to setup up for Ariba

Output

Name (Type)

Description

Pattern

`versions` (file)

File containing software versions

versions.yml

`db` (file)

An Ariba prepared database

*.tar.gz

Tools

ariba
GPL v3

ARIBA: Antibiotic Resistance Identification By Assembly

sanger-pathogens.github.io/ariba https://github.com/sanger-pathogens/ariba 10.1099/mgen.0.000131