Download and prepare database for Ariba analysis
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’ ]
db_name{:bash}
:string
A database to setup up for Ariba
db{:bash}
:file
An Ariba prepared database
*.tar.gz
${db_name}.tar.gz{:bash}
versions_ariba{:bash}
${task.process}{:bash}
The name of the process
ariba{:bash}
The name of the tool
ariba version | sed -nE "s/ARIBA version: //p"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
ARIBA: Antibiotic Resistance Identification By Assembly
