Description

Download and prepare database for Ariba analysis

Input

name:type
description
pattern

meta{:bash}

:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

db_name{:bash}

:string

A database to setup up for Ariba

Output

name:type
description
pattern

db{:bash}

meta{:bash}

:file

An Ariba prepared database

*.tar.gz

${db_name}.tar.gz{:bash}

:file

An Ariba prepared database

*.tar.gz

versions{:bash}

versions.yml{:bash}

:file

File containing software versions

versions.yml

Tools

ariba
GPL v3

ARIBA: Antibiotic Resistance Identification By Assembly