Query input FASTQs against Ariba formatted databases
meta
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads
:file
Paired-end reads in FASTQ format
*_R[1|2].{fastq.gz,fq.gz}
meta2
db
An Ariba prepared database
*.tar.gz
results
A directory of Ariba analysis outputs
*
${prefix}/*
versions_ariba
${task.process}
:string
The name of the process
ariba
The name of the tool
ariba version 2>&1 | sed '1!d;s/ARIBA version: //'
:eval
The expression to obtain the version of the tool
versions
ARIBA: Antibiotic Resistance Identification By Assembly
