Query input FASTQs against Ariba formatted databases
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
Paired-end reads in FASTQ format
*_R[1|2].{fastq.gz,fq.gz}
meta2{:bash}
db{:bash}
An Ariba prepared database
*.tar.gz
results{:bash}
A directory of Ariba analysis outputs
*
${prefix}/*{:bash}
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
ARIBA: Antibiotic Resistance Identification By Assembly
