Query input FASTQs against Ariba formatted databases
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
Paired-end reads in FASTQ format
*_R[1|2].{fastq.gz,fq.gz}
db
An Ariba prepared database
*.tar.gz
versions
File containing software versions
versions.yml
results
A directory of Ariba analysis outputs
*
ARIBA: Antibiotic Resistance Identification By Assembly
