Description

Query input FASTQs against Ariba formatted databases

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

reads:file

Paired-end reads in FASTQ format

*_R[1|2].{fastq.gz,fq.gz}

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

db:file

An Ariba prepared database

*.tar.gz

Output

name:type
description
pattern

results

meta:file

A directory of Ariba analysis outputs

*

${prefix}/*:file

A directory of Ariba analysis outputs

*

versions

versions.yml:file

File containing software versions

versions.yml

Tools

ariba
GPL v3

ARIBA: Antibiotic Resistance Identification By Assembly