Query input FASTQs against Ariba formatted databases
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads:file
Paired-end reads in FASTQ format
*_R[1|2].{fastq.gz,fq.gz}
db:file
An Ariba prepared database
*.tar.gz
results
meta:file
A directory of Ariba analysis outputs
*
${prefix}/*:file
versions
versions.yml:file
File containing software versions
versions.yml
ARIBA: Antibiotic Resistance Identification By Assembly
