Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
genome
:string
hg38, hg19, GRCh38, GRCh37 for humans are accepted
blacklist
blacklist*${genome}*.tsv.gz
The blacklist removes recurrent alignment artifacts and transcripts which are present in healthy tissue
.tsv.gz
cytobands
cytobands*${genome}*.tsv
:file
Coordinates of the Giemsa staining bands. This information is used to draw ideograms
.tsv
protein_domains
protein_domains*${genome}*.gff3
Protein domain annotations
*.gff3
known_fusions
known_fusions*${genome}*.tsv.gz
Arriba is more sensitive to those fusions to improve the detection rate of expected or highly relevant events, such as recurrent fusions
*.tsv.gz
versions_arriba
${task.process}
The name of the process
arriba
The name of the tool
arriba -h | grep "Version:" 2>&1 | sed "s/Version:\s//"
:eval
The expression to obtain the version of the tool
versions
Fast and accurate gene fusion detection from RNA-Seq data
