Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
genome:string
hg38, hg19, GRCh38, GRCh37 for humans are accepted
blacklist
blacklist*${genome}*.tsv.gz:string
The blacklist removes recurrent alignment artifacts and transcripts which are present in healthy tissue
.tsv.gz
cytobands
cytobands*${genome}*.tsv:file
Coordinates of the Giemsa staining bands. This information is used to draw ideograms
.tsv
protein_domains
protein_domains*${genome}*.gff3:file
Protein domain annotations
*.gff3
known_fusions
known_fusions*${genome}*.tsv.gz:file
Arriba is more sensitive to those fusions to improve the detection rate of expected or highly relevant events, such as recurrent fusions
*.tsv.gz
versions
versions.yml:file
File containing software versions
versions.yml
Fast and accurate gene fusion detection from RNA-Seq data
