Arriba is a command-line tool for the detection of gene fusions from RNA-Seq data.
genome{:bash}
:string
hg38, hg19, GRCh38, GRCh37 for humans are accepted
blacklist{:bash}
blacklist*${genome}*.tsv.gz{:bash}
The blacklist removes recurrent alignment artifacts and transcripts which are present in healthy tissue
.tsv.gz
cytobands{:bash}
cytobands*${genome}*.tsv{:bash}
:file
Coordinates of the Giemsa staining bands. This information is used to draw ideograms
.tsv
protein_domains{:bash}
protein_domains*${genome}*.gff3{:bash}
Protein domain annotations
*.gff3
known_fusions{:bash}
known_fusions*${genome}*.tsv.gz{:bash}
Arriba is more sensitive to those fusions to improve the detection rate of expected or highly relevant events, such as recurrent fusions
*.tsv.gz
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
Fast and accurate gene fusion detection from RNA-Seq data
