Description

Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

images (file)

Overlapping tile image data in formats from most commercial microscopes

*.{ome.tiff,ome.tif,rcpnl,btf,nd2,tiff,tif,czi}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’ ]

tif (file)

A pyramidal, tiled OME-TIFF file created from input images.

*.ome.tif

versions (file)

File containing software versions

versions.yml

Tools

ashlar
MIT

Alignment by Simultaneous Harmonization of Layer/Adjacency Registration