Description

Alignment by Simultaneous Harmonization of Layer/Adjacency Registration

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

images:file

Overlapping tile image data in formats from most commercial microscopes

*.{ome.tiff,ome.tif,rcpnl,btf,nd2,tiff,tif,czi}

opt_dfp:file

Optional dark field image data

opt_ffp:file

Optional flat field image data

Output

name:type
description
pattern

tif

meta:map

Groovy Map containing sample information e.g. [ id:‘test’ ]

*.ome.tif:file

A pyramidal, tiled OME-TIFF file created from input images.

*.ome.tif

versions

versions.yml:file

File containing software versions

versions.yml

Tools

ashlar
MIT

Alignment by Simultaneous Harmonization of Layer/Adjacency Registration