Description

Assembly summary statistics in JSON format

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

assembly (file)

FASTA file for a given assembly

*.fasta

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

json (file)

Assembly statistics in JSON format

*.json
included in
pairgenomealign
maintainers
Github user sateeshperi
Github user mjcipriano
get in touch
Ask a question on Slack Open an issue on GitHub

Tools

assemblyscan
MIT

Assembly summary statistics in JSON format

github.com/rpetit3/assembly-scan