modules/ataqv_ataqv
ataqv function of a corresponding ataqv tool
ATAC-seqqcataqv
Input
Name (Type)
Description
Pattern
BAM index file with the same prefix as bam file. Required if tss_file input is provided.
*.bam.bai
The subject of the experiment, which determines the list of autosomes (see “Reference Genome Configuration” section at https://github.com/ParkerLab/ataqv).
A BED file of transcription start sites for the experiment organism. If supplied, a TSS enrichment score will be calculated according to the ENCODE data standards. This calculation requires that the BAM file of alignments be indexed.
*.bed
A BED file containing excluded regions. Peaks or TSS overlapping these will be ignored.
*.bed