Output
Name (Type)
Description
Pattern
A list of pmd patterns estimated with the empirical method for each readgroup
*_PMD_input_Empiric.txt
A list of pmd patterns estimated with the exponential method for each readgroup
*_PMD_input_Exponential.txt
The counts of all possible transitions for each read position
(or up to a certain position, see specific command length)
*_PMD_Table_counts.txt