Package candidate assemblies for clustering by Autocycler.
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:'sample1' ]
[ id:'sample1' ]
assemblies{:bash}
:file
Candidate assembly files (typically FASTA) generated for the sample.
*.{fasta,fa,fasta.gz,fa.gz}
gfa{:bash}
compress/${prefix}/*.gfa{:bash}
Assembly graph files ready for clustering.
compress/*/*.gfa
stats{:bash}
compress/${prefix}/*.yaml{:bash}
Summary statistics generated during compression.
compress/*/*.yaml
versions_autocycler{:bash}
${task.process}{:bash}
:string
The name of the process
autocycler{:bash}
The name of the tool
autocycler --version | sed 's/^[^ ]* //'{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
A tools for generating consensus long-read assemblies for bacterial genomes.
