A bacteriophage lifestyle prediction tool
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
fasta
FASTA file containing phage contigs/scaffolds/chromosomes (if it is a multi-FASTA file be sure to add the --multi_fasta argument)
--multi_fasta
*.{fasta,fna,fa}
versions
File containing software versions
versions.yml
bacphlip_results
TSV file containing Temperate and Virulent scores for each phage sequence
*.bacphlip
hmmsearch_results
TSV file containing binary output indicating gene presence/absence based on hmmsearch results
*.hmmsearch.tsv
A Random Forest classifier to predict bacteriophage lifestyle
