removes unused references from header of sorted BAM/CRAM files.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
bam:file
BAM/CRAM file
*.{bam,cram}
bam
*.bam:file
Sorted BAM/CRAM file
versions
versions.yml:file
File containing software versions
versions.yml
Removes unaligned references in aligned BAM alignment file
