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:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
bam
:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
json
*.json
json containing bam statistics
versions_bamstats
${task.process}
:string
The name of the process
bamstats
The name of the tool
bamstats --version | grep "version: " | sed -e s"/version: //"
:eval
The expression to obtain the version of the tool
versions
A command line tool to compute mapping statistics from a BAM file
