Description

write your description here

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

bam (file)

Sorted BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

json (file)

json containing bam statistics

*.json
maintainer
Github user johnoooh
get in touch
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Tools

bamstats
BSD-3-clause

A command line tool to compute mapping statistics from a BAM file

github.com/guigolab/bamstats https://github.com/guigolab