Description

write your description here

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

bam:file

Sorted BAM/CRAM/SAM file

*.{bam,cram,sam}

Output

name:type
description
pattern

json

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.json:file

json containing bam statistics

*.json

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bamstats
BSD-3-clause

A command line tool to compute mapping statistics from a BAM file