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meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
bam:file
Sorted BAM/CRAM/SAM file
*.{bam,cram,sam}
json
*.json:file
json containing bam statistics
*.json
versions_bamstats
${task.process}:string
The name of the process
bamstats:string
The name of the tool
bamstats --version | grep "version: " | sed -e s"/version: //:string
The version of the tool
A command line tool to compute mapping statistics from a BAM file
