Description

BamTools provides both a programmer’s API and an end-user’s toolkit for handling BAM files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

bam (file)

BAM file

*.bam

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

versions (file)

File containing software versions

versions.yml

out (file)

The data in the asked format (bed, fasta, fastq, json, pileup, sam, yaml)

*.{bed,fasta,fastq,json,pileup,sam,yaml}