Description

BamTools provides both a programmer's API and an end-user's toolkit for handling BAM files.

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

bam (file)

BAM file

*.bam

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:'test', single_end:false ]

versions (file)

File containing software versions

versions.yml

out (file)

The data in the asked format (bed, fasta, fastq, json, pileup, sam, yaml)

*.{bed,fasta,fastq,json,pileup,sam,yaml}
included in
isoseq
author
Github user sguizard
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Tools