Description

Render an assembly graph in GFA 1.0 format to PNG and SVG image formats

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

gfa:file

Assembly graph in GFA 1.0 format

*.gfa

Output

name:type
description
pattern

png

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.png:file

Bandage image in PNG format

*.png

svg

meta:map

Groovy Map containing sample information e.g. [ id:‘test’, single_end

]

*.svg:file

Bandage image in SVG format

*.svg

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bandage
GPL-3.0-or-later

Bandage - a Bioinformatics Application for Navigating De novo Assembly Graphs Easily