barrnap uses a hmmer profile to find rrnas in reads or contig fasta files
meta
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
reads
fastq or fasta file nucleotides (it can be amino acids as well)
*.{fna,fasta,faa,fastq}
dbname
database to use(bacteria, archaea, eukaryota, metazoan mitochondria)
versions
File containing software versions
versions.yml
gff
gff file containing coordinates of genes
*.gff
Barrnap predicts the location of ribosomal RNA genes in genomes (bacteria, archaea, metazoan mitochondria and eukaryotes).
