Description

barrnap uses a hmmer profile to find rrnas in reads or contig fasta files

Input

name:type
description
pattern

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

fasta:file

fasta file

*.fasta

dbname:string

database to use(bacteria, archaea, eukaryota, metazoan mitochondria)

Output

name:type
description
pattern

gff

meta:map

Groovy Map containing sample information e.g. [ id:'test', single_end:false ]

*.gff:file

gff file containing coordinates of genes

*.gff

versions

versions.yml:file

File containing software versions

versions.yml

Tools

barrnap
GPL v3

Barrnap predicts the location of ribosomal RNA genes in genomes (bacteria, archaea, metazoan mitochondria and eukaryotes).