barrnap uses a hmmer profile to find rrnas in reads or contig fasta files
meta:map
Groovy Map containing sample information e.g. [ id:'test', single_end:false ]
[ id:'test', single_end:false ]
fasta:file
fasta file
*.fasta
dbname:string
database to use(bacteria, archaea, eukaryota, metazoan mitochondria)
gff
*.gff:file
gff file containing coordinates of genes
*.gff
versions
versions.yml:file
File containing software versions
versions.yml
Barrnap predicts the location of ribosomal RNA genes in genomes (bacteria, archaea, metazoan mitochondria and eukaryotes).
