Demultiplex Element Biosciences bases files
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
run_manifest
RunManifest file
*.{csv}
run_dir
Input run directory containing optionally containing a RunManifest.json if run_manifest is not supplied
versions
File containing software versions
versions.yml
sample_fastq
Demultiplexed sample FASTQ files
output/Samples/*/*_R*.fastq.gz
sample_json
Demultiplexed sample stats
output/Samples/*/*.json
qc_report
QC HTML report
output/*.html
run_stats
generated_run_manifest
Updated Run Manifest JSON from the run_manifest csv
output/RunManifest.json
metrics
Sample metrics
output/Metrics.csv
unassigned
Unassigned Sequences
output/UnassignedSequences.csv
Demultiplexes sequencing data and converts base calls into FASTQ files for secondary analysis