Adapter and quality trimming of sequencing reads
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
contaminants
Reference files containing adapter and/or contaminant sequences for sequence kmer matching
The trimmed/modified fastq reads
*fastq.gz
versions
File containing software versions
versions.yml
log
Bbduk log file
*bbduk.log
BBMap is a short read aligner, as well as various other bioinformatic tools.
