Merging overlapping paired reads into a single read.
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads:file
List of input paired end fastq files
*.{fastq,fq}.gz
interleave:boolean
Indicates whether the input paired reads are interleaved or not
merged
*_merged.fastq.gz:file
merged reads
*_merged.fastq
unmerged
*_unmerged.fastq.gz:file
unmerged reads
*_unmerged.fastq
ihist
*_ihist.txt:file
insert size histogram
*_ihist.txt
versions
versions.yml:file
File containing software versions
versions.yml
log
*.log:file
log file containing stdout and stderr from bbmerge.sh
*.log
BBMap is a short read aligner, as well as various other bioinformatic tools.
