Merging overlapping paired reads into a single read.
meta
:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads
:file
List of input paired end fastq files
*.{fastq,fq}.gz
interleave
:boolean
Indicates whether the input paired reads are interleaved or not
merged
*_merged.fastq.gz
merged reads
*_merged.fastq
unmerged
*_unmerged.fastq.gz
unmerged reads
*_unmerged.fastq
ihist
*_ihist.txt
insert size histogram
log
*.log
log file containing stdout and stderr from bbmerge.sh
versions_bbmap
${task.process}
:string
The name of the process
bbmap
The name of the tool
bbversion.sh | grep -v "Duplicate cpuset"
:eval
The expression to obtain the version of the tool
versions
BBMap is a short read aligner, as well as various other bioinformatic tools.
