Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
*.fastq.gz{:bash}
The reordered/clumped (and if necessary deduped) fastq reads
*.clumped.fastq.gz
log{:bash}
*.log{:bash}
Clumpify log file
*clumpify.log
versions_bbmap{:bash}
${task.process}{:bash}
:string
The name of the process
bbmap{:bash}
The name of the tool
bbversion.sh | grep -v "Duplicate cpuset"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
BBMap is a short read aligner, as well as various other bioinformatic tools.
