Create 30% Smaller, Faster Gzipped Fastq Files. And remove duplicates
meta{:bash}
:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end:false ]
reads{:bash}
:file
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
*.fastq.gz{:bash}
The reordered/clumped (and if necessary deduped) fastq reads
*.clumped.fastq.gz
log{:bash}
*.log{:bash}
Clumpify log file
*clumpify.log
versions{:bash}
versions.yml{:bash}
File containing software versions
versions.yml
BBMap is a short read aligner, as well as various other bioinformatic tools.
