Filter out sequences by sequence header name(s)
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
reads
List of input FastQ files of size 1 and 2 for single-end and paired-end data, respectively.
names_to_filter
String containing names of reads to filter out of the fastq files.
output_format
String with the format of the output file, e.g. fastq.gz, fasta, fasta.bz2
interleaved_output
Whether to produce an interleaved fastq output file
versions
File containing software versions
versions.yml
The trimmed/modified fastq reads
*${output_format}
log
filterbyname.sh log file
*.filterbyname.log
BBMap is a short read aligner, as well as various other bioinformatic tools.
