Description

Creates an index from a fasta file, ready to be used by bbmap.sh in mapping mode.

Input

Name (Type)
Description
Pattern

fasta (fasta)

fasta formatted file with nucleotide sequences

*.{fna,fa,fasta}

Output

Name (Type)
Description
Pattern

versions (file)

File containing software versions

versions.yml

db (directory)

Directory with index files

ref

Tools

bbmap
UC-LBL license (see package)

BBMap is a short read aligner, as well as various other bioinformatic tools.