Creates an index from a fasta file, ready to be used by bbmap.sh in mapping mode.
fasta{:bash}
:file
fasta formatted file with nucleotide sequences
*.{fna,fa,fasta}
index{:bash}
ref{:bash}
:directory
Directory containing the index files
versions_bbmap{:bash}
${task.process}{:bash}
:string
The name of the process
bbmap{:bash}
The name of the tool
bbversion.sh | grep -v "Duplicate cpuset"{:bash}
:eval
The expression to obtain the version of the tool
versions{:bash}
BBMap is a short read aligner, as well as various other bioinformatic tools.
