Description

Creates an index from a fasta file, ready to be used by bbmap.sh in mapping mode.

Input

name:type
description
pattern

fasta:file

fasta formatted file with nucleotide sequences

*.{fna,fa,fasta}

Output

name:type
description
pattern

index

ref:directory

Directory containing the index files

versions

versions.yml:file

File containing software versions

versions.yml

Tools

bbmap
UC-LBL license (see package)

BBMap is a short read aligner, as well as various other bioinformatic tools.