Re-pairs reads that became disordered or had some mates eliminated.
meta:map
Groovy Map containing sample information e.g. [ id:'sample1', single_end:false ]
[ id:'sample1', single_end:false ]
reads:file
List of input paired end fastq files
*.{fastq,fq}.gz
interleave:boolean
Indicates whether the input paired reads are interleaved or not
repaired
*_repaired.fastq.gz:file
re-paired reads
*_repaired.fastq.gz
singleton
${prefix}_singleton.fastq.gz:file
singleton reads
*singleton.fastq.gz
versions
versions.yml:file
File containing software versions
versions.yml
log
*.log:file
log file containing stdout and stderr from repair.sh
*.log
Repair.sh is a tool that re-pairs reads that became disordered or had some mates eliminated tools.
