Add or remove annotations.
meta
Groovy Map containing sample information e.g. [ id:‘test’, single_end
input
Query VCF or BCF file, can be either uncompressed or compressed
index
Index of the query VCF or BCF file
annotations
Bgzip-compressed file with annotations
annotations_index
Index of the annotations file
header_lines
Contains lines to append to the output VCF header
versions
File containing software versions
versions.yml
vcf
Compressed annotated VCF file
*{vcf,vcf.gz,bcf,bcf.gz}
