Add or remove annotations.
meta:map
Groovy Map containing sample information e.g. [ id:‘test’, single_end
input:file
Query VCF or BCF file, can be either uncompressed or compressed
index:file
Index of the query VCF or BCF file
annotations:file
Bgzip-compressed file with annotations
annotations_index:file
Index of the annotations file
header_lines:file
Contains lines to append to the output VCF header
vcf
*.{vcf,vcf.gz,bcf,bcf.gz}:file
Compressed annotated VCF file
*{vcf,vcf.gz,bcf,bcf.gz}
tbi
*.tbi:file
Alternative VCF file index
*.tbi
csi
*.csi:file
Default VCF file index
*.csi
versions
versions.yml:file
File containing software versions
versions.yml
