Description

Concatenate VCF files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcfs (list)

List containing 2 or more vcf files
e.g. [ ‘file1.vcf’, ‘file2.vcf’ ]

tbi (list)

List containing 2 or more index files (optional)
e.g. [ ‘file1.tbi’, ‘file2.tbi’ ]

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF concatenated output file

*.{vcf.gz}

versions (file)

File containing software versions

versions.yml