Description

Concatenate VCF files

Input

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcfs (files)

List containing 2 or more vcf files
e.g. [ ‘file1.vcf’, ‘file2.vcf’ ]

tbi (files)

List containing 2 or more index files (optional)
e.g. [ ‘file1.tbi’, ‘file2.tbi’ ]

Output

Name (Type)
Description
Pattern

meta (map)

Groovy Map containing sample information
e.g. [ id:‘test’, single_end

]

vcf (file)

VCF concatenated output file

*.{vcf.gz}

versions (file)

File containing software versions

versions.yml
included in
radseq raredisease sarek
authors
Github user abhi18av Github user nvnieuwk
get in touch
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Tools

concat
MIT

Concatenate VCF files.

http://samtools.github.io/bcftools/bcftools http://www.htslib.org/doc/bcftools 10.1093/bioinformatics/btp352